UGENE 1.8.0

A complex genome analysis suite
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ugene UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module.  

Here are some key features of "UGENE":

  • Multiple sequence alignment using MUSCLE 3 and MUSCLE 4;
  • HMM profiles build and search, based on the source of HMMER 2 and HMMER 3;
  • PCR Primers design using Primer 3;
  • Protein secondary structure prediction using GOR IV and PSIPRED;
  • Search for restriction enzymes and integration with REBASE;
  • Extremely fast repeat finder;
  • Search for transcription factor binding sites using SITECON;
  • ORF finder;
  • Complete Smith-Waterman algorithm implementation.
  • Visual and interactive genome browsing;
  • Chromatograms visualization;
  • 3D viewer for files in PDB and MMDB formats;
  • Multiple sequence alignment editor;
  • Easy to use workflow designer for custom computational workflows.
  • Complete support of modern multicore processors and SSE instructions;
  • Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream;
  • Integrated solutions for Cell Broadband Engine;
  • Private solutions for supercomputers and distributed computing.

 
 
 
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App's Details
Our Rating: rating  9/10
License: Freeware (GPL)
Added / Updated: 22.10.2010 / 22.10.2010
Publishers URL: Publisher's Website
Size: 13,3 MB
Downloads: 809 x / Download Now!

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